Protein Design and Protein Folding: Unlocking the Machinery of Life

Proteins are the molecular engines that power every biological process. Decoding their structure is the key to mastering biology itself.

Since 1999, this site has been dedicated to tracking the evolution of protein folding and design research. What started as a theoretical challenge has blossomed into one of the most exciting frontiers in modern science.

For decades, the "protein folding problem" - predicting a protein's 3D shape solely from its amino acid sequence- was considered one of biology's grandest challenges. Today, thanks to breakthroughs in artificial intelligence and computational biology, we are not just predicting structures; we are designing entirely new ones.

From Discovery to Design

"As the rules behind their folding are unfolded, the mysteries of biology will be unraveled."

Why This Matters

We have moved beyond observation. Scientists can now harness this knowledge to build de novo proteins—molecules that have never existed in nature. These custom-built proteins hold the potential to:

  • Cure Disease: Creating highly specific therapeutics that target viruses or cancer cells with atomic precision.
  • Solve Environmental Crises: Designing enzymes that can break down plastics or capture carbon more efficiently than nature ever could.
  • Revolutionize Materials: Building self-assembling nanomaterials for next-generation electronics and sensors.

The vision we held in 1999 is becoming reality: we are entering an era where we can program matter itself to solve thousands of problems that were once thought impossible.

This Domain is For Sale

If you are a biotech company, and is interested in the ProteinDesign.com domain name, please contact us with an offer. ProteinFolding.com is also available.

How the Heart Works: A Basic Overview by David Yee

Posted by: david on Wednesday/March 31/2010 - 11:10 PM
Protein News
How the Heart Works: A Basic Overview by David Yee (Originally Written 10-5-1994)
I. Location
A. the heart is located in the chest; it lies left of the body's midline, above and in contact with the diaphragm
B. situated immediately behind the breastbone, or sternum, and between the lungs, with apex tiled to the body cavity's left side
II. Heart has two cavities, divided by the cardiac septum
A. Right cavity takes in oxygen poor blood from the body and pumps it to the lungs
1. has an atrium (collecting chamber) and a ventricle (pumping chamber); atrium is on ....


free open-source software for automated protein design

Posted by: Anonymous on Thursday/May 03/2007 - 04:27 PM
Protein News
EGAD is a free open-source program for protein design and mutant prediction. EGAD's main focus is performing protein design on fixed backbone scaffolds. It can also consider multiple structures simultaneously for designing specific binding proteins or locking proteins into specific conformational states. In addition to natural protein residues, EGAD can also consider free-moving ligands with or without rotatable bonds. It may even be possible to use EGAD for drug design. EGAD can be used with a single processor, but it can take advantage of the power of parallelization to perform certain jobs quickly.

Some of the tasks EGAD can....

New version of Protein Folding Database released

Posted by: david on Thursday/October 12/2006 - 02:32 AM
Protein News
Ashley from Monash University in Australia would like to announce that the group she is working with have released a new version of the Protein Folding Database.

"The database aims to collect all folding data into one repository and, within the framework of the International Foldeomics Consortium, encourage sharing and data analysis. We are particularly interested in allowing the graphical analysis of raw-data on the site."

You can register to do advanced searches and to submit your own protein folding data.

Request for contributors, help

Posted by: david on Wednesday/August 14/2002 - 10:33 PM
Announcements
Hi- I'm looking for people who are interested in protein research who would like to contribute news, articles, opinions, etc. on a constant basis to the site. I simply don't have the time nor resources to update the site on a constant basis so any help would be great. Anyone who's interested please click on Contact Us on the main menu & drop me a note - thanks!



Welcome to ProteinDesign.com / ProteinFolding.com!

Posted by: david on Saturday/May 19/2001 - 11:36 PM
Announcements
Welcome to ProteinDesign.com / ProteinFolding.com! This site is dedicated to providing the latest news on the front of protein research. Whenever I find a relevant research paper I will also post a small excerpt here and link to it. The target audience of this site is anyone who is interested in protein science. I personally have a *fascination* with proteins and their amazing characteristics and capabilities. If you have any suggestions/comments, please feel free to let me know. And if you have any news you like to contribute, please send them over.